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Hyaluronan oligosaccharides form double-helical duplexes in water:1,4-dioxane mixed solvent

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dc.title Hyaluronan oligosaccharides form double-helical duplexes in water:1,4-dioxane mixed solvent en
dc.contributor.author Kolaříková, Alena
dc.contributor.author Kutálková, Eva
dc.contributor.author Hrnčiřík, Josef
dc.contributor.author Ingr, Marek
dc.relation.ispartof Carbohydrate Polymers
dc.identifier.issn 0144-8617 Scopus Sources, Sherpa/RoMEO, JCR
dc.identifier.issn 1879-1344 Scopus Sources, Sherpa/RoMEO, JCR
dc.date.issued 2024
utb.relation.volume 326
dc.type article
dc.language.iso en
dc.publisher Elsevier Ltd
dc.identifier.doi 10.1016/j.carbpol.2023.121632
dc.relation.uri https://www.sciencedirect.com/science/article/pii/S0144861723010974
dc.relation.uri https://www.sciencedirect.com/science/article/pii/S0144861723010974/pdfft?md5=8a048e13b7cac23a39c8bcfef4d856a1&pid=1-s2.0-S0144861723010974-main.pdf
dc.subject hyaluronan en
dc.subject duplex en
dc.subject double helix en
dc.subject mixed solvent en
dc.subject ionic bond en
dc.subject hydrogen bond en
dc.description.abstract Hyaluronic acid (HA) is a hydrophilic natural polysaccharide consisting of alternating monosaccharide units of glucuronic acid and N-acetyl glucosamine. In aqueous solutions the electrostatic repulsion of the carboxylate groups hampers the formation of supermolecular structures that can be partially stabilized by the addition of salt. Increased permittivity of the mixed water:organic solvents causes better compensation of the negative charge of HA chains by dissolved cations which changes their interactions with other molecules. In this study we simulate interactions of two HA chains in water:1,4-dioxane and water:tert-butanol mixed solvents with varying NaCl concentrations using molecular dynamics (MD). Anti-parallel double-helix-like duplexes are formed in NaCl-containing water:1,4-dioxane mixture and remain stable even when NaCl is removed. Parallel duplexes separate after a short time. In water:tert-butanol analogous duplexes are unstable. Stability of HA duplexes is thus determined by the solvent composition and the ability of its components to separate in the solvation shell of HA molecules, as well as by the mutual orientation of the chains. en
utb.faculty Faculty of Technology
dc.identifier.uri http://hdl.handle.net/10563/1011789
utb.identifier.obdid 43885389
utb.identifier.scopus 2-s2.0-85177893349
utb.identifier.wok 001125438100001
utb.identifier.pubmed 38142101
utb.identifier.coden CAPOD
utb.source j-scopus
dc.date.accessioned 2024-02-02T10:29:28Z
dc.date.available 2024-02-02T10:29:28Z
dc.description.sponsorship Ministerstvo Školství, Mládeže a Tělovýchovy, MŠMT, (90254); Univerzita Tomáše Bati ve Zlíně, UTB, (IGA/FT/2022/009, IGA/FT/2023/006)
dc.description.sponsorship Ministry of Education, Youth and Sports of the Czech Republic through e-INFRA CZ [90254]; Internal funding agency of Tomas Bata University in Zlin [IGA/FT/2022/009, IGA/FT/2023/006]
utb.ou Department of Physics and Materials Engineering
utb.contributor.internalauthor Kolaříková, Alena
utb.contributor.internalauthor Kutálková, Eva
utb.contributor.internalauthor Hrnčiřík, Josef
utb.contributor.internalauthor Ingr, Marek
utb.fulltext.sponsorship Computational resources were supplied by the project “e-Infrastruktura CZ” (e-INFRA CZ ID:90254) supported by the Ministry of Education, Youth and Sports of the Czech Republic. This work was supported by the Ministry of Education, Youth and Sports of the Czech Republic through the e-INFRA CZ (ID: 90254 ). This work was also supported by the internal funding agency of Tomas Bata University in Zlín , projects no. IGA/FT/2022/009 and IGA/FT/2023/006 to AK.
utb.wos.affiliation [Kolarikova, Alena; Kutalkova, Eva; Hrncirik, Josef; Ingr, Marek] Tomas Bata Univ Zlin, Fac Technol, Dept Phys & Mat Engn, Nam TG Masaryka 5555, Zlin 76001, Czech Republic
utb.scopus.affiliation Tomas Bata University in Zlín, Faculty of Technology, Department of Physics and Materials Engineering, Nám. T.G. Masaryka 5555, Zlín, 76001, Czech Republic
utb.fulltext.projects 90254
utb.fulltext.projects IGA/FT/2022/009
utb.fulltext.projects IGA/FT/2023/006
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